XGB - The Xanthomonas Genome Browser - Summary for Xylella fastidiosa, ATTC 35868.

Title

+ Xanthomonas axonopodis pv. citri str. 306, 306

+ Xanthomonas campestris pv. campestris str. 8004, 8004

+ Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913

+ Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10

+ Xanthomonas oryzae pv. oryzae KACC10331, KACC10331

+ Xylella fastidiosa 9a5c

+ Xylella fastidiosa Temecula1, Temecula1

+ Xylella fastidiosa, ATTC 35868

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

Summary for Xylella fastidiosa, ATTC 35868.

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chr: chromosome(s), pl: plasmid(s), seg: segment(s)

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	Xylella fastidiosa, ATTC 35868
Genomic elements	1 circular plasmid(s) Show details
Genome features	CDS: 3 genes, length ø 401 bp, gc-content ø 0.538 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 '-'-strand: 3 genes, length ø 401 bp, gc-content ø 0.538
COG categories
Amino acid transport and metabolism [E]	0
Carbohydrate transport and metabolism [G]	0
Cell cycle control, mitosis and meiosis [D]	0
Cell motility [N]	0
Cell wall/membrane biogenesis [M]	0
Chromatin structure and dynamics [B]	0
Coenzyme transport and metabolism [H]	0
Cytoskeleton [Z]	0
Defense mechanisms [V]	0
Energy production and conversion [C]	0
Extracellular structures [W]	0
Function unknown [S]	0
General function prediction only [R]	0
Inorganic ion transport and metabolism [P]	0
Intracellular trafficking and secretion [U]	0
Lipid transport and metabolism [I]	0
NOT ANALYZED	0
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	0
Posttranslational modification, protein turnover, chaperones [O]	0
RNA processing and modification [A]	0
Replication, recombination and repair [L]	0
Secondary metabolites biosynthesis, transport and catabolism [Q]	0
Signal transduction mechanisms [T]	0
Transcription [K]	0
Translation, ribosomal structure and biogenesis [J]	0
Unclassified [-]	3