Search by ID Search by GC2ID Search by GeninfoID Search by gene name Search by locus tag Search by gene description Search by gene note Search by gene length Select gene list
16S rRNA (74 genes)
btub (14 genes)
fol xac (8 genes)
heme xac? (2 genes)
ort8004 (1 genes)
wxc (10 genes)
Select gene type(s)
CDS
misc_RNA
misc_feature
operon
pseudo
rRNA
repeat_region
sig_peptide
tRNA
Search CDS with wrong boundaries
Any type of error
Wrong length of reading frame
No start codon at the begin of reading frame
No stop codon at the end of reading frame
Reading frame interrupted by stop codon
Select organism(s)
Xanthomonas axonopodis pv. citri str. 306, 306
Xanthomonas campestris pv. campestris str. 8004, 8004
Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913
Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10
Xanthomonas oryzae pv. oryzae KACC10331, KACC10331
Xylella fastidiosa 9a5c
Xylella fastidiosa Temecula1, Temecula1
Xylella fastidiosa, ATTC 35868
Search by name of genomic element Select specific genomic element(s)
Xanthomonas axonopodis pv. citri str. 306, 306: chromosome
Xanthomonas axonopodis pv. citri str. 306, 306: pXAC33
Xanthomonas axonopodis pv. citri str. 306, 306: pXAC64
Xanthomonas campestris pv. campestris str. 8004, 8004: chromosome
Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913: chromosome
Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10: chromosome
Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10: pXCV183
Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10: pXCV19
Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10: pXCV2
Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10: pXCV38
Xanthomonas oryzae pv. oryzae KACC10331, KACC10331: chromosome
Xylella fastidiosa 9a5c: chromosome
Xylella fastidiosa 9a5c: pXF1.3
Xylella fastidiosa 9a5c: pXF51
Xylella fastidiosa Temecula1, Temecula1: chromosome
Xylella fastidiosa Temecula1, Temecula1: pXFPD1.3
Xylella fastidiosa, ATTC 35868: pXF868
Select type of genomic element
chromosome
plasmid
segment
Select gene COG categories
Amino acid transport and metabolism [E]
Carbohydrate transport and metabolism [G]
Cell cycle control, mitosis and meiosis [D]
Cell motility [N]
Cell wall/membrane biogenesis [M]
Chromatin structure and dynamics [B]
Coenzyme transport and metabolism [H]
Cytoskeleton [Z]
Defense mechanisms [V]
Energy production and conversion [C]
Extracellular structures [W]
Function unknown [S]
General function prediction only [R]
Inorganic ion transport and metabolism [P]
Intracellular trafficking and secretion [U]
Lipid transport and metabolism [I]
NOT ANALYZED
Nuclear structure [Y]
Nucleotide transport and metabolism [F]
Posttranslational modification, protein turnover, chaperones [O]
RNA processing and modification [A]
Replication, recombination and repair [L]
Secondary metabolites biosynthesis, transport and catabolism [Q]
Signal transduction mechanisms [T]
Transcription [K]
Translation, ribosomal structure and biogenesis [J]
Unclassified [-]
Search by protein sequence motif (Prosite format) Select by external database identifier
UniProt
2DBase-Ecoli
Aarhus/Ghent-2DPAGE
AGD
Allergome
ANU-2DPAGE
ArachnoServer
ArrayExpress
Bgee
BindingDB
BioCyc
BRENDA
CAZy
CGD
CleanEx
COMPLUYEAST-2DPAGE
ConoServer
Cornea-2DPAGE
CTD
CYGD
dictyBase
DIP
DisProt
DOSAC-COBS-2DPAGE
DrugBank
EchoBASE
ECO2DBASE
EcoGene
eggNOG
EMBL
Ensembl
EnsemblBacteria
EnsemblFungi
EnsemblMetazoa
EnsemblPlants
EnsemblProtists
euHCVdb
EuPathDB
FlyBase
Gene3D
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GeneDB_Spombe
GeneFarm
GeneID
GeneTree
Genevestigator
GenoList
GenomeReviews
GermOnline
GlycoSuiteDB
GO
Gramene
H-InvDB
HAMAP
HGNC
HOGENOM
HOVERGEN
HPA
HSSP
InParanoid
IntAct
InterPro
IPI
KEGG
KO
LegioList
Leproma
MaizeGDB
MEROPS
MGI
MIM
MINT
NextBio
neXtProt
NMPDR
OGP
OMA
Orphanet
OrthoDB
PANTHER
Pathway_Interaction_
PDB
PDBsum
PeptideAtlas
PeroxiBase
Pfam
PharmGKB
PHCI-2DPAGE
PhosphoSite
PhosSite
PhylomeDB
PIR
PIRSF
PMAP-CutDB
PMMA-2DPAGE
PptaseDB
PRIDE
PRINTS
ProDom
ProMEX
PROSITE
ProtClustDB
ProteinModelPortal
PseudoCAP
Rat-heart-2DPAGE
Reactome
REBASE
RefSeq
REPRODUCTION-2DPAGE
RGD
SGD
Siena-2DPAGE
SMART
SMR
STRING
SUPFAM
SWISS-2DPAGE
TAIR
TCDB
TIGR
TIGRFAMs
TubercuList
UCD-2DPAGE
UCSC
UniGene
VectorBase
World-2DPAGE
WormBase
Xenbase
ZFIN
Select by external database
2DBase-Ecoli
Aarhus/Ghent-2DPAGE
AGD
Allergome
ANU-2DPAGE
ArachnoServer
ArrayExpress
Bgee
BindingDB
BioCyc
BRENDA
CAZy
CGD
CleanEx
COMPLUYEAST-2DPAGE
ConoServer
Cornea-2DPAGE
CTD
CYGD
dictyBase
DIP
DisProt
DOSAC-COBS-2DPAGE
DrugBank
EchoBASE
ECO2DBASE
EcoGene
eggNOG
EMBL
Ensembl
EnsemblBacteria
EnsemblFungi
EnsemblMetazoa
EnsemblPlants
EnsemblProtists
euHCVdb
EuPathDB
FlyBase
Gene3D
GeneCards
GeneDB_Spombe
GeneFarm
GeneID
GeneTree
Genevestigator
GenoList
GenomeReviews
GermOnline
GlycoSuiteDB
GO
Gramene
H-InvDB
HAMAP
HGNC
HOGENOM
HOVERGEN
HPA
HSSP
InParanoid
IntAct
InterPro
IPI
KEGG
KO
LegioList
Leproma
MaizeGDB
MEROPS
MGI
MIM
MINT
NextBio
neXtProt
NMPDR
OGP
OMA
Orphanet
OrthoDB
PANTHER
Pathway_Interaction_
PDB
PDBsum
PeptideAtlas
PeroxiBase
Pfam
PharmGKB
PHCI-2DPAGE
PhosphoSite
PhosSite
PhylomeDB
PIR
PIRSF
PMAP-CutDB
PMMA-2DPAGE
PptaseDB
PRIDE
PRINTS
ProDom
ProMEX
PROSITE
ProtClustDB
ProteinModelPortal
PseudoCAP
Rat-heart-2DPAGE
Reactome
REBASE
RefSeq
REPRODUCTION-2DPAGE
RGD
SGD
Siena-2DPAGE
SMART
SMR
STRING
SUPFAM
SWISS-2DPAGE
TAIR
TCDB
TIGR
TIGRFAMs
TubercuList
UCD-2DPAGE
UCSC
UniGene
VectorBase
World-2DPAGE
WormBase
Xenbase
ZFIN
HGT - Select by SIGI-HMM classification
Normal gene
Outlier normal gene
Putative alien gene
Outlier putative alien gene
Normal gene within an island
Putatively highly expressed gene
Options related to the comprehensive output
