XGB - The Xanthomonas Genome Browser - Best bidirectional hits (protein-based analysis)

Title

+ Xanthomonas axonopodis pv. citri str. 306, 306

+ Xanthomonas campestris pv. campestris str. 8004, 8004

+ Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913

+ Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10

+ Xanthomonas oryzae pv. oryzae KACC10331, KACC10331

+ Xylella fastidiosa 9a5c

+ Xylella fastidiosa Temecula1, Temecula1

+ Xylella fastidiosa, ATTC 35868

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

Best bidirectional hits

Best-bidirectional hits (BBHs) are defined as best BLAST hits between the protein sequences of genes in two genomic elements of either the same or different species. Best hits with a protein length to match length ratio less than 0.3 and a sequence identity below 30% are not classified as BBHs.

Between different genomes:

Please select the query:

Please select the target:

Select minimum sequence identity:

Select maximal number of best hits displayed for each query gene:

Genes with and without BBHs Only genes with BBHs Only genes without BBHs
Simple list view (fast)

Free access