XGB - The Xanthomonas Genome Browser - Summary for Xylella fastidiosa 9a5c.

Title

+ Xanthomonas axonopodis pv. citri str. 306, 306

+ Xanthomonas campestris pv. campestris str. 8004, 8004

+ Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913

+ Xanthomonas campestris pv. vesicatoria str. 85-10, 85-10

+ Xanthomonas oryzae pv. oryzae KACC10331, KACC10331

+ Xylella fastidiosa 9a5c

+ Xylella fastidiosa Temecula1, Temecula1

+ Xylella fastidiosa, ATTC 35868

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

Summary for Xylella fastidiosa 9a5c.

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chr: chromosome(s), pl: plasmid(s), seg: segment(s)

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	Xylella fastidiosa 9a5c
Genomic elements	1 chromosomes(s), 2 circular plasmid(s) Show details
Genome features	CDS: 2832 genes, length ø 804 bp, gc-content ø 0.521 '+'-strand: 1514 genes, length ø 802 bp, gc-content ø 0.518 '-'-strand: 1318 genes, length ø 806 bp, gc-content ø 0.524 misc_RNA: 1 genes, length ø 355 bp, gc-content ø 0.583 '+'-strand: 1 genes, length ø 355 bp, gc-content ø 0.583 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 rRNA: 6 genes, length ø 1515 bp, gc-content ø 0.549 '+'-strand: 6 genes, length ø 1515 bp, gc-content ø 0.549 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 tRNA: 49 genes, length ø 78 bp, gc-content ø 0.598 '+'-strand: 24 genes, length ø 77 bp, gc-content ø 0.609 '-'-strand: 25 genes, length ø 79 bp, gc-content ø 0.587
COG categories
Amino acid transport and metabolism [E]	143
Carbohydrate transport and metabolism [G]	97
Cell cycle control, mitosis and meiosis [D]	31
Cell motility [N]	59
Cell wall/membrane biogenesis [M]	150
Chromatin structure and dynamics [B]	0
Coenzyme transport and metabolism [H]	91
Cytoskeleton [Z]	0
Defense mechanisms [V]	29
Energy production and conversion [C]	107
Extracellular structures [W]	2
Function unknown [S]	182
General function prediction only [R]	251
Inorganic ion transport and metabolism [P]	83
Intracellular trafficking and secretion [U]	107
Lipid transport and metabolism [I]	59
NOT ANALYZED	56
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	42
Posttranslational modification, protein turnover, chaperones [O]	106
RNA processing and modification [A]	1
Replication, recombination and repair [L]	151
Secondary metabolites biosynthesis, transport and catabolism [Q]	40
Signal transduction mechanisms [T]	69
Transcription [K]	114
Translation, ribosomal structure and biogenesis [J]	147
Unclassified [-]	1001